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pub:neuroanatomy:frulhns:start [2013/12/31 00:59] – [Data] jefferis | pub:neuroanatomy:frulhns:start [2014/01/21 23:45] – [Data] jefferis | ||
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- | Supplemental data to accompany: | ||
- | [[http:// | ||
- | Cell, Volume 155, Issue 7, 1610-1623, 19 December 2013 [[http:// | ||
- | Johannes Kohl*, Aaron D. Ostrovsky*, Shahar Frechter, Gregory S.X.E. Jefferis | ||
- | |||
- | ====== Data ====== | ||
- | The following data is available to accompany the publication | ||
- | |||
- | * Tabular data underlying the figures is available through a dedicated R package, [[https:// | ||
- | * The vignette for this package completely recreates the Supplemental statistics table for the paper. | ||
- | * The current version of the package requires the [[https:// | ||
- | * Cached versions of the vignettes (frulhns v0.2.1) are available here: | ||
- | * [[http:// | ||
- | * [[http:// | ||
- | * Traced Neurons | ||
- | * before registration | ||
- | * [[http:// | ||
- | * [[http:// | ||
- | * after registration to IS2 template brain | ||
- | * [[http:// | ||
- | * [[http:// | ||
- | * 3D confocal image data (on a hard drive, on request to Greg) | ||
- | ====== Electrophysiological Analysis ====== | ||
- | Analysis and plotting of electrophysiological data initially acquired with Neuromatic/ | ||
- | |||
- | <code python> | ||
- | # Start R | ||
- | |||
- | # install (one time only) | ||
- | install.packages(" | ||
- | install.packages(" | ||
- | # download gphys package from Jefferis lab website to a temporary file | ||
- | download.file(' | ||
- | # install | ||
- | install.packages(tf, | ||
- | # clean up temp file | ||
- | unlink(tf) | ||
- | |||
- | library(gphys) | ||
- | # get introductory help on package | ||
- | ?gphys | ||
- | # get help on main plot function (including examples) | ||
- | ? | ||
- | </ | ||
- | |||
- | note that this download includes full source code for the functions in the package along with documentation and examples. | ||
- | ====== Methods ====== | ||
- | Detailed methods are included in the manuscript supplemental information. Further information on these topics is available here | ||
- | * [[alex: | ||
- | * [[odorants]] Full list of odorants in this study | ||
- | * [[warping_manual: | ||
- | * [[https:// |