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pub:neuroanatomy:frulhns:start [2013/12/30 19:02] – [Data] jefferispub:neuroanatomy:frulhns:start [2013/12/31 00:59] – [Data] jefferis
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 ====== Data ====== ====== Data ======
-The following data will be made available on publication+The following data is available to accompany the publication
  
-  * Tabular data underlying the figures is being made available through a dedicated R package, [[https://github.com/jefferis/frulhns|frulhns]] available on github.+  * Tabular data underlying the figures is available through a dedicated R package, [[https://github.com/jefferis/frulhns|frulhns]] hosted on github.
     * The vignette for this package completely recreates the Supplemental statistics table for the paper.     * The vignette for this package completely recreates the Supplemental statistics table for the paper.
     * The current version of the package requires the [[https://github.com/jefferis/AnalysisSuite|AnalysisSuite]] R codebase to be installed at a specific location (''~/projects/AnalysisSuite'', see github README) in order for the vignettes to be built from scratch.     * The current version of the package requires the [[https://github.com/jefferis/AnalysisSuite|AnalysisSuite]] R codebase to be installed at a specific location (''~/projects/AnalysisSuite'', see github README) in order for the vignettes to be built from scratch.
-    * Cached versions of the vignettes (v0.2.1) are available here:+    * Cached versions of the vignettes (frulhns v0.2.1) are available here:
       * [[http://jefferislab.org/si/frulhns/neurons.pdf|neurons.pdf]]       * [[http://jefferislab.org/si/frulhns/neurons.pdf|neurons.pdf]]
       * [[http://jefferislab.org/si/frulhns/statistics.pdf|statistics.pdf]]       * [[http://jefferislab.org/si/frulhns/statistics.pdf|statistics.pdf]]
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       * [[http://flybrain.mrc-lmb.cam.ac.uk/si/frulhns/traces.IS2.zip|amira format]]       * [[http://flybrain.mrc-lmb.cam.ac.uk/si/frulhns/traces.IS2.zip|amira format]]
       * [[http://flybrain.mrc-lmb.cam.ac.uk/si/frulhns/traces.IS2.swc.zip|swc format]]       * [[http://flybrain.mrc-lmb.cam.ac.uk/si/frulhns/traces.IS2.swc.zip|swc format]]
-  * 3D confocal image data (on a hard drive on request to Greg)+  * 3D confocal image data (on a hard drive, on request to Greg)
 ====== Electrophysiological Analysis ====== ====== Electrophysiological Analysis ======
 Analysis and plotting of electrophysiological data initially acquired with Neuromatic/Nclamp was carried out in R, primarily using a custom R package, [[https://github.com/jefferis/gphys|gphys]]. Although I would generally recommend using the latest version available via github, to install the specific package version associated with the manuscript, do as follows: Analysis and plotting of electrophysiological data initially acquired with Neuromatic/Nclamp was carried out in R, primarily using a custom R package, [[https://github.com/jefferis/gphys|gphys]]. Although I would generally recommend using the latest version available via github, to install the specific package version associated with the manuscript, do as follows:

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