This page provides some information / links related to the FLiACT Connectomics workshop held at Janelia Farm 5-7 October 2013.

  * Image Registration: [[http://jefferislab.org/warping|jefferislab.org/warping]]
  * Bridging Registrations: [[https://github.com/jefferis/BridgingRegistrations|github.com/jefferis/BridgingRegistrations]]
  * Neuron Search: [[http://jefferislab.org/nblast|jefferislab.org/nblast]]
  * Virtual Fly Brain: [[http://www.virtualflybrain.org/|virtualflybrain.org]]
  * FlyCircuit: http://www.flycircuit.tw/

Direct Links to Software Used

  * [[http://fiji.sc|Fiji]]
  * [[http://teem.sourceforge.net/unrrdu/index.html|unu]]
  * [[http://www.nitrc.org/projects/cmtk/|CMTK]]
  * [[http://www.r-project.org/|R]]
    * [[http://cran.r-project.org/web/packages/apcluster]]
    * [[http://cran.r-project.org/web/packages/rgl|rgl]]
    * [[https://github.com/jefferis/AnalysisSuite|AnalysisSuite]]

Anatomy
  * http://flybrain.mrc-lmb.cam.ac.uk/frudata
    * Clone/Cluster nomenclature http://flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=pub:neuroanatomy:fru:clone_correspondences