Click for 3D rendering of cluster

About

Scores are NBLAST (version 2) similarity scores between each neuron and the exemplar (Gad1-F-700038), normalised to the self-score of the exemplar. The higher the better! Scores > 0 indicate a match of some sort. Excellent matches will have scores > 0.5.

Do you recognise any of the neurons in this cluster? Email us!

Credits

Raw data provided by flycircuit.tw as described in Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution by Ann-Shyn Chiang et al.

Image processing carried out with unu, CMTK, and Fiji.

Further processing carried out in R with nat. Clustering used package apcluster. 3D visualisation written from rgl by writeWebGL.

Similar clusters

The most similar clusters to this one are:

Cluster Exemplar Supercluster Exemplar normalised score
669 Gad1-F-600025 XIV 0.47
680 Gad1-F-200016 XIV 0.47
537 Cha-F-400065 XIV 0.43
236 Gad1-F-100063 XIV 0.41
204 Trh-M-100025 XIV 0.38

Cluster composition

This cluster has 13 neurons. The exemplar of this cluster (Gad1-F-700038) is drawn in black.

Neuron idid Gene name Driver Sex Raw score Normalised score
Gad1-F-700038 9683 GadMARCM-F000533_seg001 Gad1-Gal4 F 3883.73 1.00
Cha-F-000112 5283 ChaMARCM-F000674_seg002 Cha-Gal4 F 2434.46 0.62
Cha-F-300240 5531 ChaMARCM-F000839_seg001 Cha-Gal4 F 2895.28 0.75
VGlut-F-300650 5875 DvGlutMARCM-F004557_seg001 VGlut-Gal4 F 2500.83 0.66
Cha-F-400144 7190 ChaMARCM-F000639_seg001 Cha-Gal4 F 2634.66 0.70
Cha-F-000023 8054 ChaMARCM-F000127_seg001 Cha-Gal4 F 2530.64 0.68
Cha-F-300072 8273 ChaMARCM-F000254_seg002 Cha-Gal4 F 2674.46 0.64
npf-F-300009 9447 npfMARCM-F000037_seg001 npf-GAL4 F 2429.17 0.69
Gad1-F-300121 9600 GadMARCM-F000467_seg001 Gad1-Gal4 F 2932.89 0.74
Gad1-F-400104 9639 GadMARCM-F000494_seg001 Gad1-Gal4 F 2859.37 0.71
Cha-F-400025 10127 ChaMARCM-F000075_seg001 Cha-Gal4 F 2492.44 0.62
Gad1-F-100000 13165 GadMARCM-F003_seg1 Gad1-Gal4 F 2753.30 0.72
VGlut-F-300243 15070 DvGlutMARCM-F1408_seg1 VGlut-Gal4 F 2602.18 0.70