[[http://www.amiravis.com/|Amira]] is a 3d visualisation software.  It has its quirks and is far from free, but provides good all round visualisation, mixing of fast volume rendering and surface rendered neurons and access to [[hxskeletonize|Felix Evers' semi-automated tracing plugin]].

  * [[Developer]]
  * [[zib_amira|Zib Amira]]
  * [[Admin]]
  * [[Grouping Surface Regions]]
  * [[hxskeletonize|Tracing neurons with hxskeletonize]]
  * [[Crashes]]
  * [[Read NRRD files]]
  * [[Using ShowClones]] to switch between and colorize volume renderings of different stacks e.g. clones or any other masked image
  * [[Using ResultViewer]] to examine affine registrations and fix bad ones with surface based affine registrations
  * [[Adding a Scale Bar]]