* Registration software
    * Fully open source cross-platform [[http://www.nitrc.org/projects/cmtk|CMTK software]] by Torsten Rohlfing and collaborators.
    * [[http://flybrain.stanford.edu/GUI/|Simple GUI wrapper]] for CMTK (//MacOS X only//).
  * Source code for Neuroanatomy Analysis Suite for [[http://www.r-project.org/|R]]. Available from:
    * [[http://flybrain.stanford.edu/R]]
    * [[http://github.com/jefferis/AnalysisSuite|as a git repository]]
  * Our ImageJ plugins are now bundled with [[http://pacific.mpi-cbg.de/wiki/index.php/Fiji|Fiji]]
    * Biorad PIC (w)
    * NRRD (r/w)
    * Standalone versions of these plugins are also available
      * [[http://flybrain.stanford.edu/nrrd|NRRD]]
      * [[http://flybrain.stanford.edu/imageJplugins|Biorad]]
  * [[http://www.amira.com/|Amira]] plugins for input/ouput of [[http://teem.sourceforge.net/nrrd/|NRRD]] format files:
    * [[http://github.com/jefferis/hxNrrdIO|source code repository on github]]